Maltcms

The "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.

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Maui

The "Maltcms User Interface" is a modular graphical user interface application based on the Netbeans Rich Client Platform. It provides project management for Metabolomics experiments and integrates Maltcms and its pipelines for one- and two-dimensional chromatography and mass spectrometry data. Convenient and interactive visualizations of raw and processed data, as well as processing results allow easy analysis and interpretation of results. Statistical methods, like Anova and PCA are provided via integration of the R statistical framwork. Maui can export normalized, aligned and putatively identified peak tables in csv format for easy downstream integration into existing workflows and third-party software.

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News

Changed on 2014-10-17 by Nils Hoffmann